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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3u2mFADFAD-linked sulfhydryl oxidase ALR1.8.3.21.000
3tk0FADFAD-linked sulfhydryl oxidase ALR1.8.3.20.623
3u2lFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.599
1oqcFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.576
3r7cFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.562
3mbgFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.534
4ldkFADFAD-linked sulfhydryl oxidase ALR1.8.3.20.528
4e0iFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.527
4e0hFADMitochondrial FAD-linked sulfhydryl oxidase ERV11.8.3.20.487
2hj3FADFAD-linked sulfhydryl oxidase ERV1/0.473
1obnASVIsopenicillin N synthase1.21.3.10.462
1xddAAYIntegrin alpha-L/0.457
1jr8FADFAD-linked sulfhydryl oxidase ERV21.8.3.20.454
3t58FADSulfhydryl oxidase 11.8.3.20.448
5dldUD1UDP-N-Acetylglucosamine 2-epimerase/0.448
2jl1NAPTriphenylmethane reductase/0.447
3owaFADAcyl-CoA dehydrogenase/0.447
3k3hBYEHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.445
4iae1DXAlr2278 protein/0.444
1t4cCOAFormyl-CoA:oxalate CoA-transferase/0.443
4bfzZVZPantothenate kinase2.7.1.330.443
4relKMPGlycosyltransferase/0.443
3gwlFADFAD-linked sulfhydryl oxidase1.8.3.20.442
3mg3ECHOrange carotenoid-binding protein/0.442
3zoiM2WIsopenicillin N synthase1.21.3.10.442