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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3tyvHI3Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3tyvHI3Genome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.699
2yoj8Y6Genome polyprotein2.7.7.480.659
3u4o08EGenome polyprotein2.7.7.480.612
2giqNN2Genome polyprotein2.7.7.480.592
4mk928RGenome polyprotein2.7.7.480.588
3g86T18Genome polyprotein2.7.7.480.585
4mka2AYGenome polyprotein2.7.7.480.580
3hkyIX6Genome polyprotein2.7.7.480.576
3uph0C1Genome polyprotein2.7.7.480.574
3d28B34Genome polyprotein2.7.7.480.570
3bsc2PDGenome polyprotein2.7.7.480.567
3hkwIX6Genome polyprotein2.7.7.480.562
3d5m4MSGenome polyprotein2.7.7.480.555
3h59H59Genome polyprotein2.7.7.480.552
4mkb28VGenome polyprotein2.7.7.480.552
3igvB80Genome polyprotein2.7.7.480.543
3h2lYAKGenome polyprotein2.7.7.480.532
3ska053Genome polyprotein2.7.7.480.528
3br9DEYGenome polyprotein2.7.7.480.523
3ske054Genome polyprotein2.7.7.480.512
2gc8885Polyprotein/0.500
3gynB42Genome polyprotein2.7.7.480.500
3gnvXNZGenome polyprotein2.7.7.480.492
3csoXNIGenome polyprotein2.7.7.480.485
4mk728OGenome polyprotein2.7.7.480.478
4eaw0NQGenome polyprotein2.7.7.480.476
4ih61EPGenome polyprotein2.7.7.480.457
3bsa1PDGenome polyprotein2.7.7.480.445
3upi0C2Genome polyprotein2.7.7.480.440