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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3tbaADPRibonucleoside-diphosphate reductase large chain 11.17.4.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3tbaADPRibonucleoside-diphosphate reductase large chain 11.17.4.11.000
2cvwGDPRibonucleoside-diphosphate reductase large chain 11.17.4.10.539
2cvuCDPRibonucleoside-diphosphate reductase large chain 11.17.4.10.516
3o0oGDPVitamin B12-dependent ribonucleotide reductase/0.492
4jzyFADCryptochrome-1/0.471
3s8cCDPRibonucleoside-diphosphate reductase large chain 11.17.4.10.467
1xjkADPVitamin B12-dependent ribonucleotide reductase/0.465
2eudGCQRibonucleoside-diphosphate reductase large chain 11.17.4.10.463
4ewn0VRImidazole glycerol phosphate synthase subunit HisF4.1.30.457
3k8t2A5Ribonucleoside-diphosphate reductase large chain 11.17.4.10.455
2cy0NAPShikimate dehydrogenase (NADP(+))/0.451
3gobHXXDdmC/0.449
3tb9CDPRibonucleoside-diphosphate reductase large chain 11.17.4.10.449
5dp2NAPCurF/0.449
4bfvZVVPantothenate kinase2.7.1.330.448
4gu5FADCryptochrome-1/0.447
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.447
3ai3NDPNADPH-sorbose reductase/0.444
4djaFAD(6-4) photolyase/0.444
4xguADPPutative pachytene checkpoint protein 2/0.444
1icpFMN12-oxophytodienoate reductase 11.3.1.420.443
3mk6ACOPantothenate kinase 32.7.1.330.442
1w6hTITPlasmepsin-23.4.23.390.441