Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3rusADPChaperonin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3rusADPChaperonin/1.000
3ruqADPChaperonin/0.642
3ruvANPChaperonin/0.567
1q3qANPThermosome subunit alpha/0.551
4ki8ADP60 kDa chaperonin/0.509
1sx4ADP60 kDa chaperonin/0.506
1pf9ADP60 kDa chaperonin/0.493
1q3sADPThermosome subunit alpha/0.482
1kp8AGS60 kDa chaperonin/0.463