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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3rudNADUDP-N-acetylglucosamine 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3rudNADUDP-N-acetylglucosamine 4-epimerase/1.000
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.635
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.611
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.608
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.605
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.605
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.598
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.596
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.592
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.477
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.476
2p5uNADUDP-glucose 4-epimerase/0.471
1g1aNADdTDP-glucose 4,6-dehydratase/0.466
4egbNADdTDP-glucose 4,6-dehydratase/0.465
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.460
1naiNADUDP-glucose 4-epimerase5.1.3.20.448
1kvrNADUDP-glucose 4-epimerase5.1.3.20.444
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.440