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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ru9NADUDP-N-acetylglucosamine 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ru9NADUDP-N-acetylglucosamine 4-epimerase/1.000
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.652
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.648
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.644
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.636
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.636
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.627
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.616
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.612
2p5uNADUDP-glucose 4-epimerase/0.492
1i3lNADUDP-glucose 4-epimerase/0.462
4egbNADdTDP-glucose 4,6-dehydratase/0.456
1g1aNADdTDP-glucose 4,6-dehydratase/0.453
1kvrNADUDP-glucose 4-epimerase5.1.3.20.452
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.449
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.447
1eq2NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.445