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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ru7NADUDP-N-acetylglucosamine 4-epimerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ru7NADUDP-N-acetylglucosamine 4-epimerase/1.000
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.663
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.632
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.631
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.625
3ruhNADUDP-N-acetylglucosamine 4-epimerase/0.623
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.620
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.620
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.615
2p5uNADUDP-glucose 4-epimerase/0.505
4egbNADdTDP-glucose 4,6-dehydratase/0.484
1kvrNADUDP-glucose 4-epimerase5.1.3.20.475
1i3lNADUDP-glucose 4-epimerase/0.470
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.468
4lisNADUDP-glucose 4-epimerase (Eurofung)/0.466
1g1aNADdTDP-glucose 4,6-dehydratase/0.464
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.455
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.454
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.449
1eq2NAPADP-L-glycero-D-manno-heptose-6-epimerase/0.442
2c54NADGDP-mannose 3,5-epimerase5.1.3.180.442
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.442