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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3q0uLL3HTH-type transcriptional regulator EthR

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3q0uLL3HTH-type transcriptional regulator EthR/1.000
3o8gO8GHTH-type transcriptional regulator EthR/0.725
3g1mRF3HTH-type transcriptional regulator EthR/0.703
3sfi3SFHTH-type transcriptional regulator EthR/0.644
3o8hO8HHTH-type transcriptional regulator EthR/0.636
3q0vLL4HTH-type transcriptional regulator EthR/0.634
3tp0FO5HTH-type transcriptional regulator EthR/0.629
3g1lRF2HTH-type transcriptional regulator EthR/0.520
4dw60MNHTH-type transcriptional regulator EthR/0.509
2ykbYKBHeat shock protein HSP 90-alpha/0.470
4qbjNHMGlycylpeptide N-tetradecanoyltransferase2.3.1.970.468
3t59FADSulfhydryl oxidase 11.8.3.20.458
3iupNDPPossible NADH oxidoreductase/0.457
2ol4JPNEnoyl-ACP reductase/0.452
3p6mDSOCamphor 5-monooxygenase1.14.15.10.452
4j6cSTRCytochrome P450 monooxygenase/0.452
3antS82Bifunctional epoxide hydrolase 23.3.2.100.450
3tdaPN0Cytochrome P450 2D6/0.450
3cz7ACOHistone acetyltransferase RTT1092.3.1.480.449
4m87NADEnoyl-[acyl-carrier-protein] reductase [NADH]/0.449
2ykjYKJHeat shock protein HSP 90-alpha/0.448
1ek2CDUBifunctional epoxide hydrolase 2/0.447
1re9DSOCamphor 5-monooxygenase1.14.15.10.447
3p6oETGCamphor 5-monooxygenase1.14.15.10.447
2q9fC3SCholesterol 24-hydroxylase/0.446
3ox4NADAlcohol dehydrogenase 21.1.1.10.446
2vpyMGDThiosulfate reductase/0.444
4b7xNAPProbable oxidoreductase/0.444
4ge40KEKynurenine/alpha-aminoadipate aminotransferase, mitochondrial2.6.1.390.443
4j6dTESCytochrome P450 monooxygenase/0.443
4jjiNADAlcohol dehydrogenase class-3/0.442
1nkzRG1Light-harvesting protein B-800/850 alpha chain/0.441
1nkzRG1Light-harvesting protein B-800/850 beta chain/0.441
2cmvNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.440
2ykcYKCHeat shock protein HSP 90-alpha/0.440
3p6pA6BCamphor 5-monooxygenase1.14.15.10.440