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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3ns2PYVAbscisic acid receptor PYL2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3ns2PYVAbscisic acid receptor PYL2/1.000
3nr4PYVAbscisic acid receptor PYL2/0.741
3nj0PYVAbscisic acid receptor PYL2/0.601
3nmpPYVAbscisic acid receptor PYL2/0.539
4dscA8SAbscisic acid receptor PYL3/0.501
3ujlA8SAbscisic acid receptor PYL2/0.491
3nmnPYVAbscisic acid receptor PYL1/0.471
3nmhPYVAbscisic acid receptor PYL2/0.467
3kb0A8SAbscisic acid receptor PYL2/0.466
3negPYVAbscisic acid receptor PYL1/0.464
4ds8A8SAbscisic acid receptor PYL3/0.459
4dsbA8SAbscisic acid receptor PYL3/0.459
3zkyWT4Isopenicillin N synthase1.21.3.10.458
3zvuA8SAbscisic acid receptor PYR1/0.458
1bk0ACVIsopenicillin N synthase1.21.3.10.452
1xu9CPSCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.448
4jdaA9SAbscisic acid receptor PYL3/0.448
3ojiPYVAbscisic acid receptor PYL3/0.446
4bb6HD1Corticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.446
3vt7VDXVitamin D3 receptor/0.445
1blzACVIsopenicillin N synthase1.21.3.10.441
2y60M8FIsopenicillin N synthase1.21.3.10.441
4lg5A1OAbscisic acid receptor PYL2/0.441
4ug91EWNitric oxide synthase oxygenase1.14.13.1650.441
3zoiM2WIsopenicillin N synthase1.21.3.10.440