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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3mqe416Prostaglandin G/H synthase 21.14.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3mqe416Prostaglandin G/H synthase 21.14.99.11.000
3rr3FLRProstaglandin G/H synthase 21.14.99.10.578
3ntgD72Prostaglandin G/H synthase 21.14.99.10.561
3ln1CELProstaglandin G/H synthase 21.14.99.10.546
5ikqJMSProstaglandin G/H synthase 21.14.99.10.531
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.529
4rrxLURProstaglandin G/H synthase 21.14.99.10.523
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.515
4coxIMNProstaglandin G/H synthase 21.14.99.10.508
2oyuIMSProstaglandin G/H synthase 11.14.99.10.505
4rrwLURProstaglandin G/H synthase 21.14.99.10.489
4rrzLURProstaglandin G/H synthase 21.14.99.10.489
2aylFLPProstaglandin G/H synthase 11.14.99.10.484
5ikrID8Prostaglandin G/H synthase 21.14.99.10.484
6coxS58Prostaglandin G/H synthase 21.14.99.10.480
3kk6CELProstaglandin G/H synthase 11.14.99.10.479
3q7dNPXProstaglandin G/H synthase 21.14.99.10.478
4ph9IBPProstaglandin G/H synthase 21.14.99.10.478
3n8wFLPProstaglandin G/H synthase 11.14.99.10.476
1q4gBFLProstaglandin G/H synthase 11.14.99.10.473
4otyLURProstaglandin G/H synthase 21.14.99.10.467
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
1pxxDIFProstaglandin G/H synthase 21.14.99.10.461
3n8xNIMProstaglandin G/H synthase 11.14.99.10.460
1ht834CProstaglandin G/H synthase 11.14.99.10.458
2vn0TDZCytochrome P450 2C8/0.458
1cx2S58Prostaglandin G/H synthase 21.14.99.10.457
1eqhFLPProstaglandin G/H synthase 11.14.99.10.457
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.451
1wlvCOAPhenylacetic acid degradation protein PaaI/0.448
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
4m10ICDProstaglandin G/H synthase 21.14.99.10.445
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443
3n8zFLPProstaglandin G/H synthase 11.14.99.10.443
1ht5FL2Prostaglandin G/H synthase 11.14.99.10.442
1k6pXN3Gag-Pol polyprotein3.4.23.160.442
3frqERYErythromycin resistance repressor protein/0.442
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.442
4enhFVXCholesterol 24-hydroxylase/0.440