sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3mhy | ATP | Nitrogen regulatory protein P-II 1 | / | 1.000 | |
| 2xul | ATP | Nitrogen regulatory protein P-II | / | 0.576 | |
| 4ozn | ATP | Ammonium transporter | / | 0.561 | |
| 3ncq | ATP | Nitrogen regulatory protein P-II (GlnB-2) | / | 0.522 | |
| 1v9o | ADP | Signaling protein | / | 0.508 | |
| 4co4 | ATP | Nitrogen regulatory protein P-II 1 | / | 0.487 | |
| 3ncr | ADP | Nitrogen regulatory protein P-II (GlnB-2) | / | 0.480 | |
| 1v3s | ATP | Signaling protein | / | 0.478 | |
| 3ta2 | ATP | Nitrogen regulatory protein P-II (GlnB-3) | / | 0.473 | |
| 3lf0 | ATP | Nitrogen regulatory protein P-II | / | 0.465 | |
| 3r6s | CMP | CRP-like cAMP-activated global transcriptional regulator | / | 0.463 | |
| 4rx6 | ATP | Nitrogen regulatory PII-like protein | / | 0.460 | |
| 3ub5 | ATP | Actin, cytoplasmic 1 | / | 0.459 | |
| 2vpr | TDC | Tetracycline repressor protein class H | / | 0.456 | |
| 4a4w | YFB | Peroxisome proliferator-activated receptor gamma | / | 0.449 | |
| 2rbe | NDP | Corticosteroid 11-beta-dehydrogenase isozyme 1 | 1.1.1.146 | 0.448 | |
| 4jaz | STL | Peroxisome proliferator-activated receptor gamma | / | 0.445 | |
| 3ake | C5P | Cytidylate kinase | / | 0.442 | |
| 4cnz | ADP | Nitrogen regulatory protein P-II 1 | / | 0.441 |