sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3lkh | LT6 | Genome polyprotein | 2.7.7.48 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3lkh | LT6 | Genome polyprotein | 2.7.7.48 | 1.000 | |
| 3h3s | H15 | Collagen type IV alpha-3-binding protein | / | 0.455 | |
| 1xdd | AAY | Integrin alpha-L | / | 0.454 | |
| 3vt5 | YI2 | Vitamin D3 receptor | / | 0.454 | |
| 3w0g | W07 | Vitamin D3 receptor | / | 0.446 | |
| 4nie | NBH | Nuclear receptor ROR-gamma | / | 0.446 | |
| 3vrw | YS5 | Vitamin D3 receptor | / | 0.443 | |
| 4ite | TEY | Vitamin D3 receptor | / | 0.443 | |
| 2po7 | CHD | Ferrochelatase, mitochondrial | 4.99.1.1 | 0.442 | |
| 2uxo | TAC | HTH-type transcriptional regulator TtgR | / | 0.440 |