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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3krfIPEGeranyl diphosphate synthase large subunit

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3krfIPEGeranyl diphosphate synthase large subunit/1.000
3krfDSTGeranyl diphosphate synthase large subunit/0.645
4lfgIPEPutative geranyltranstransferase/0.605
1rqjIPEFarnesyl diphosphate synthase2.5.1.100.578
4kqsIPEFarnesyl pyrophosphate synthase2.5.1.100.532
3ez3IPEFarnesyl pyrophosphate synthase, putative/0.522
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.515
4nkeIPEFarnesyl pyrophosphate synthase2.5.1.100.512
1rqjRISFarnesyl diphosphate synthase2.5.1.100.475
3oabDSTGeranyl diphosphate synthase large subunit/0.463