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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3kk6CELProstaglandin G/H synthase 11.14.99.1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3kk6CELProstaglandin G/H synthase 11.14.99.11.000
2oyuIMSProstaglandin G/H synthase 11.14.99.10.600
3ln1CELProstaglandin G/H synthase 21.14.99.10.600
2oyeIM8Prostaglandin G/H synthase 11.14.99.10.550
4coxIMNProstaglandin G/H synthase 21.14.99.10.527
3rr3FLRProstaglandin G/H synthase 21.14.99.10.518
1cx2S58Prostaglandin G/H synthase 21.14.99.10.511
6coxS58Prostaglandin G/H synthase 21.14.99.10.510
4rrxLURProstaglandin G/H synthase 21.14.99.10.500
3mqe416Prostaglandin G/H synthase 21.14.99.10.499
4fm5DF0Prostaglandin G/H synthase 21.14.99.10.491
3ntgD72Prostaglandin G/H synthase 21.14.99.10.490
5ikrID8Prostaglandin G/H synthase 21.14.99.10.488
1q4gBFLProstaglandin G/H synthase 11.14.99.10.483
3n8wFLPProstaglandin G/H synthase 11.14.99.10.480
4otyLURProstaglandin G/H synthase 21.14.99.10.476
5ikqJMSProstaglandin G/H synthase 21.14.99.10.472
2aylFLPProstaglandin G/H synthase 11.14.99.10.471
3n8xNIMProstaglandin G/H synthase 11.14.99.10.464
3pghFLPProstaglandin G/H synthase 21.14.99.10.463
1ht5FL2Prostaglandin G/H synthase 11.14.99.10.462
3qlhT27Gag-Pol polyprotein2.7.7.490.457
1eqgIBPProstaglandin G/H synthase 11.14.99.10.456
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.456
1eqhFLPProstaglandin G/H synthase 11.14.99.10.455
3n8zFLPProstaglandin G/H synthase 11.14.99.10.454
2hw2RFPRifampin ADP-ribosyl transferase/0.453
3t14FADSulfide-quinone reductase/0.453
4ucnMYAGlycylpeptide N-tetradecanoyltransferase/0.453
1ht834CProstaglandin G/H synthase 11.14.99.10.452
2nnhREACytochrome P450 2C8/0.448
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.448
3vspEK8Peroxisome proliferator-activated receptor gamma/0.447
2npaMMBPeroxisome proliferator-activated receptor alpha/0.446
3m31FADEndoplasmic oxidoreductin-11.8.40.443
3p99LNPLanosterol 14-alpha-demethylase/0.443
3q7dNPXProstaglandin G/H synthase 21.14.99.10.441
1uhoVDNcGMP-specific 3',5'-cyclic phosphodiesterase/0.440
2q5p241Peroxisome proliferator-activated receptor gamma/0.440
4jib1L6cGMP-dependent 3',5'-cyclic phosphodiesterase3.1.4.170.440
4wa9AXITyrosine-protein kinase ABL12.7.10.20.440
5d7pOCZNAD-dependent protein deacetylase sirtuin-23.5.10.440