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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3if9FADGlycine oxidase1.4.3.19

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3if9FADGlycine oxidase1.4.3.191.000
1ng3FADGlycine oxidase1.4.3.190.585
1ng4FADGlycine oxidase1.4.3.190.584
1ryiFADGlycine oxidase1.4.3.190.572
2du8FADD-amino-acid oxidase1.4.3.30.563
1kifFADD-amino-acid oxidase1.4.3.30.531
2e48FADD-amino-acid oxidase1.4.3.30.501
3znpFADD-amino-acid oxidase1.4.3.30.480
4yshFADGlycine oxidase/0.480
2rgoFADAlpha-Glycerophosphate Oxidase/0.468
3uklFADUDP-galactopyranose mutase/0.466
3sglFADtRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC/0.465
3ukkFADUDP-galactopyranose mutase/0.465
3vqrFADPutative oxidoreductase/0.465
3axbFADPutative oxidoreductase/0.448
4u8nFDAUDP-galactopyranose mutase/0.446
4u8kFDAUDP-galactopyranose mutase/0.444
5hxwFADL-amino acid deaminase/0.440