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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3icpNADNAD-dependent epimerase/dehydratase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3icpNADNAD-dependent epimerase/dehydratase/1.000
3ko8NADNAD-dependent epimerase/dehydratase/0.788
3eheNADUDP-glucose 4-epimerase (GalE-1)/0.589
3rufNADUDP-N-acetylglucosamine 4-epimerase/0.496
3ru7NADUDP-N-acetylglucosamine 4-epimerase/0.491
3ru9NADUDP-N-acetylglucosamine 4-epimerase/0.491
3rudNADUDP-N-acetylglucosamine 4-epimerase/0.490
3rueNADUDP-N-acetylglucosamine 4-epimerase/0.484
2q1wNADPutative nucleotide sugar epimerase/ dehydratase/0.480
3lu1NADUDP-N-acetylglucosamine 4-epimerase/0.475
2hunNAD336aa long hypothetical dTDP-glucose 4,6-dehydratase/0.473
4gllNADUDP-glucuronic acid decarboxylase 14.1.1.350.471
3ruaNADUDP-N-acetylglucosamine 4-epimerase/0.467
2p5uNADUDP-glucose 4-epimerase/0.466
2c20NADUDP-glucose 4-epimerase/0.455
3rucNADUDP-N-acetylglucosamine 4-epimerase/0.455
2pzjNADPutative nucleotide sugar epimerase/ dehydratase/0.454
4egbNADdTDP-glucose 4,6-dehydratase/0.451
1g1aNADdTDP-glucose 4,6-dehydratase/0.450
4twrNADNAD binding site:NAD-dependent epimerase/dehydratase:UDP-glucose 4-epimerase/0.448
1bxkNADdTDP-glucose 4,6-dehydratase 2/0.445
3sxpNADADP-L-glycero-D-mannoheptose-6-epimerase/0.441