Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3hxbBD5Geranylgeranyl transferase type-2 subunit beta2.5.1.60

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3hxbBD5Geranylgeranyl transferase type-2 subunit beta2.5.1.601.000
4gtv7TRGeranylgeranyl transferase type-2 subunit beta2.5.1.600.649
4gtt7TQGeranylgeranyl transferase type-2 subunit beta2.5.1.600.604
3pz3PZ3Geranylgeranyl transferase type-2 subunit beta2.5.1.600.540
3hxdBD7Geranylgeranyl transferase type-2 subunit beta2.5.1.600.510
3hxeBD8Geranylgeranyl transferase type-2 subunit beta2.5.1.600.506
3c72CX1Geranylgeranyl transferase type-2 subunit beta2.5.1.600.503
3hxfBD9Geranylgeranyl transferase type-2 subunit beta2.5.1.600.499
3pz23PZGeranylgeranyl transferase type-2 subunit beta2.5.1.600.499
3hxcBD6Geranylgeranyl transferase type-2 subunit beta2.5.1.600.490
4gts7TPGeranylgeranyl transferase type-2 subunit beta2.5.1.600.482