Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gynB42Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gynB42Genome polyprotein2.7.7.481.000
3br9DEYGenome polyprotein2.7.7.480.720
2giqNN2Genome polyprotein2.7.7.480.634
3u4r08FGenome polyprotein2.7.7.480.622
3igvB80Genome polyprotein2.7.7.480.607
4mka2AYGenome polyprotein2.7.7.480.602
3d28B34Genome polyprotein2.7.7.480.595
3d5m4MSGenome polyprotein2.7.7.480.585
3g86T18Genome polyprotein2.7.7.480.584
3tyvHI3Genome polyprotein2.7.7.480.576
3h59H59Genome polyprotein2.7.7.480.575
3bsc2PDGenome polyprotein2.7.7.480.562
3e51N35Genome polyprotein2.7.7.480.560
4mk928RGenome polyprotein2.7.7.480.559
4mkb28VGenome polyprotein2.7.7.480.553
3hkwIX6Genome polyprotein2.7.7.480.542
3hkyIX6Genome polyprotein2.7.7.480.538
3h2lYAKGenome polyprotein2.7.7.480.534
2gc8885Polyprotein/0.530
3csoXNIGenome polyprotein2.7.7.480.530
3u4o08EGenome polyprotein2.7.7.480.529
3uph0C1Genome polyprotein2.7.7.480.525
3ska053Genome polyprotein2.7.7.480.503
4eaw0NQGenome polyprotein2.7.7.480.493
3ske054Genome polyprotein2.7.7.480.481
2yoj8Y6Genome polyprotein2.7.7.480.474
3gnvXNZGenome polyprotein2.7.7.480.471
4ih71ERGenome polyprotein2.7.7.480.452