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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3gqzGF7Beta-lactamase3.5.2.6

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3gqzGF7Beta-lactamase3.5.2.61.000
5dozNDPJamJ/0.486
5irnADPNucleotide binding oligomerization domain containing 2/0.463
1ndhFADNADH-cytochrome b5 reductase 31.6.2.20.459
1x27ASP_TYR_VAL_HIS_PTRTyrosine-protein kinase Lck2.7.10.20.454
2ejzSAHDiphthine synthase/0.453
2abjCBCBranched-chain-amino-acid aminotransferase, cytosolic2.6.1.420.446
2oegUPGUDP-glucose pyrophosphorylase/0.443
2y1tDUDSPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS3.6.1.230.442
4du82P0Mevalonate diphosphate decarboxylase/0.441
5bt9NAP3-oxoacyl-(Acyl-carrier-protein) reductase/0.441