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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3giyFMN(S)-mandelate dehydrogenase1.1.99.31

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3giyFMN(S)-mandelate dehydrogenase1.1.99.311.000
1szfFMNCytochrome b2, mitochondrial1.1.2.30.558
1kbiFMNCytochrome b2, mitochondrial1.1.2.30.546
2j6xFMNLactate oxidase/0.539
5ebuFMNLactate oxidase/0.523
1fcbFMNCytochrome b2, mitochondrial1.1.2.30.516
1szgFNSCytochrome b2, mitochondrial1.1.2.30.515
1kbjFMNCytochrome b2, mitochondrial1.1.2.30.507
1goxFMNPeroxisomal (S)-2-hydroxy-acid oxidase1.1.3.150.493
4rjeFNRLactate oxidase/0.490
2nliFMNLactate oxidase/0.488
2e77FMNLactate oxidase/0.485
1icpFMN12-oxophytodienoate reductase 11.3.1.420.467
3p62FMNPentaerythritol tetranitrate reductase/0.465
4yl2FMNLactate oxidase/0.464
1qcwFNSCytochrome b2, mitochondrial1.1.2.30.463
4tmbFMNOld yellow enzyme/0.462
1bwkFMNNADPH dehydrogenase 11.6.99.10.454
1bwlFMNNADPH dehydrogenase 11.6.99.10.453
1icqFMN12-oxophytodienoate reductase 11.3.1.420.450
2du2FMNLactate oxidase/0.450
1icsFMN12-oxophytodienoate reductase 11.3.1.420.444
1h50FMNPentaerythritol tetranitrate reductase/0.442
4m5pFMNNADPH dehydrogenase/0.440