Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3g86T18Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3g86T18Genome polyprotein2.7.7.481.000
4mk928RGenome polyprotein2.7.7.480.599
2giqNN2Genome polyprotein2.7.7.480.582
3bsc2PDGenome polyprotein2.7.7.480.581
3u4r08FGenome polyprotein2.7.7.480.578
3tyvHI3Genome polyprotein2.7.7.480.576
4mka2AYGenome polyprotein2.7.7.480.576
3igvB80Genome polyprotein2.7.7.480.567
4mkb28VGenome polyprotein2.7.7.480.552
3hkyIX6Genome polyprotein2.7.7.480.546
3hkwIX6Genome polyprotein2.7.7.480.537
3d5m4MSGenome polyprotein2.7.7.480.535
3d28B34Genome polyprotein2.7.7.480.526
3h2lYAKGenome polyprotein2.7.7.480.525
3gynB42Genome polyprotein2.7.7.480.520
3br9DEYGenome polyprotein2.7.7.480.516
3h59H59Genome polyprotein2.7.7.480.493
3csoXNIGenome polyprotein2.7.7.480.489
3u4o08EGenome polyprotein2.7.7.480.479
3gnvXNZGenome polyprotein2.7.7.480.477
4eaw0NQGenome polyprotein2.7.7.480.474
3uph0C1Genome polyprotein2.7.7.480.467
3ska053Genome polyprotein2.7.7.480.466
2gc8885Polyprotein/0.460
3h5uH5UGenome polyprotein2.7.7.480.447