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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3g0cRUFDipeptidyl peptidase 4

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3g0cRUFDipeptidyl peptidase 4/1.000
3ccc7ACDipeptidyl peptidase 4/0.602
4a5sN7FDipeptidyl peptidase 4/0.595
3g0bT22Dipeptidyl peptidase 4/0.551
2f3rG5PGuanylate kinase2.7.4.80.449
3vjkM51Dipeptidyl peptidase 4/0.448
2q1sNAIPutative nucleotide sugar epimerase/ dehydratase/0.445
2xjeU5PCytosolic purine 5'-nucleotidase3.1.3.50.441
4bzbDGTDeoxynucleoside triphosphate triphosphohydrolase SAMHD13.1.50.441
3qe2FMNNADPH--cytochrome P450 reductase/0.440