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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3fc6REARetinoic acid receptor RXR-alpha

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3fc6REARetinoic acid receptor RXR-alpha/1.000
3falREARetinoic acid receptor RXR-alpha/0.597
2p1v5TNRetinoic acid receptor RXR-alpha/0.527
1fm69CRRetinoic acid receptor RXR-alpha/0.501
2aclREARetinoic acid receptor RXR-alpha/0.499
1fbyREARetinoic acid receptor RXR-alpha/0.498
3uvvREARetinoic acid receptor RXR-alpha/0.497
2p1u4TNRetinoic acid receptor RXR-alpha/0.494
1rdtL79Retinoic acid receptor RXR-alpha/0.482
1k749CRRetinoic acid receptor RXR-alpha/0.480
1fm99CRRetinoic acid receptor RXR-alpha/0.478
1xiuREARetinoic acid receptor RXR/0.475
3oapREARetinoic acid receptor RXR-alpha/0.464
1xlsREARetinoic acid receptor RXR-alpha/0.451
3oagLPQRenin3.4.23.150.451
3p99LNPLanosterol 14-alpha-demethylase/0.451
1mznBM6Retinoic acid receptor RXR-alpha/0.450
2p1t3TNRetinoic acid receptor RXR-alpha/0.449
1mvcBM6Retinoic acid receptor RXR-alpha/0.446
1uhlMEIRetinoic acid receptor RXR-beta/0.444
3g70A5TRenin3.4.23.150.442
3g6zA7TRenin3.4.23.150.441
4m8hR4MRetinoic acid receptor RXR-alpha/0.441
4gl4NAIAlcohol dehydrogenase class-3/0.440