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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3f9mMRKGlucokinase2.7.1.2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3f9mMRKGlucokinase2.7.1.21.000
4mleVO1Glucokinase2.7.1.20.592
3vey0H5Glucokinase2.7.1.20.582
3fr0AJBGlucokinase2.7.1.20.555
3id8MRKGlucokinase2.7.1.20.552
3a0iAJIGlucokinase2.7.1.20.546
3h1vTK1Glucokinase2.7.1.20.526
4mlhVO2Glucokinase2.7.1.20.503
1v4sMRKGlucokinase2.7.1.20.497
4l3q926Glucokinase2.7.1.20.494
3vev0H4Glucokinase2.7.1.20.462
2aqkNAIEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
2h9iEADEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.454
4dhyS41Glucokinase2.7.1.20.453
2xc3RT8Steroid C26-monooxygenase1.14.13.1410.450
2iebZIDEnoyl-[acyl-carrier-protein] reductase [NADH]1.3.1.90.448
3nxuRITCytochrome P450 3A4/0.445
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.443
4q73FADBifunctional protein PutA/0.441