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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3f6rFMNFlavodoxin

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3f6rFMNFlavodoxin/1.000
1bu5RBFFlavodoxin/0.579
1c7fFMNFlavodoxin/0.553
1xyyFMNFlavodoxin/0.520
1j9gFMNFlavodoxin/0.512
3f6sFMNFlavodoxin/0.506
5xraFMNCannabinoid receptor 1/0.506
5tgzFMNCannabinoid receptor 1/0.505
4fx2FMNFlavodoxin/0.499
1azlFMNFlavodoxin/0.497
4araC56Acetylcholinesterase3.1.1.70.489
3f90FMNFlavodoxin/0.487
1akrFMNFlavodoxin/0.486
5fx2FMNFlavodoxin/0.485
4y7cFMNNADPH--cytochrome P450 reductase/0.476
1akwFMNFlavodoxin/0.472
1akuFMNFlavodoxin/0.468
2fx2FMNFlavodoxin/0.467
1fx1FMNFlavodoxin/0.463
1wsbFMNFlavodoxin/0.459
3n3aFMNProtein NrdI/0.452
4f1l0RYPoly [ADP-ribose] polymerase 142.4.2.300.448
4n82FMNRibonucleotide reductase (NrdI family protein), putative/0.447
1j9zFMNNADPH--cytochrome P450 reductase/0.443
3fktSIIBeta-secretase 13.4.23.460.442
1odcA8BAcetylcholinesterase3.1.1.70.440
1zgbA1EAcetylcholinesterase3.1.1.70.440
3uzwNAP3-oxo-5-beta-steroid 4-dehydrogenase/0.440
4m0f1YKAcetylcholinesterase3.1.1.70.440