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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3egt722Farnesyl pyrophosphate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3egt722Farnesyl pyrophosphate synthase/1.000
3dyh721Farnesyl pyrophosphate synthase/0.732
3rywK9HFarnesyl pyrophosphate synthase, putative/0.550
4h5eYS4Farnesyl pyrophosphate synthase2.5.1.100.535
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.531
4h5dYS4Farnesyl pyrophosphate synthase2.5.1.100.509
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.500
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.496
3iczPB6Farnesyl pyrophosphate synthase/0.495
4demYS4Farnesyl pyrophosphate synthase2.5.1.100.485
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.482
4h5cYS4Farnesyl pyrophosphate synthase2.5.1.100.471
3rbmB73Farnesyl pyrophosphate synthase, putative/0.466
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.460
3oabDSTGeranyl diphosphate synthase large subunit/0.456
4l2xYL2Farnesyl pyrophosphate synthase2.5.1.100.456
3krfDSTGeranyl diphosphate synthase large subunit/0.449
4dwb0M7Farnesyl pyrophosphate synthase/0.444
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.442