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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3dyh721Farnesyl pyrophosphate synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3dyh721Farnesyl pyrophosphate synthase/1.000
3egt722Farnesyl pyrophosphate synthase/0.785
4lfvYS4Farnesyl pyrophosphate synthase2.5.1.100.558
4h5eYS4Farnesyl pyrophosphate synthase2.5.1.100.548
2f94BFQFarnesyl pyrophosphate synthase2.5.1.100.543
4demYS4Farnesyl pyrophosphate synthase2.5.1.100.533
2opmNI9Farnesyl pyrophosphate synthase2.5.1.100.530
3rywK9HFarnesyl pyrophosphate synthase, putative/0.519
3ldwZOLFarnesyl pyrophosphate synthase, putative/0.513
3iczPB6Farnesyl pyrophosphate synthase/0.512
4h5dYS4Farnesyl pyrophosphate synthase2.5.1.100.509
4dwb0M7Farnesyl pyrophosphate synthase/0.508
3oabDSTGeranyl diphosphate synthase large subunit/0.502
4q23RISFarnesyl pyrophosphate synthase2.5.1.100.497
4h5cYS4Farnesyl pyrophosphate synthase2.5.1.100.495
4nkeRISFarnesyl pyrophosphate synthase2.5.1.100.495
3rbmB73Farnesyl pyrophosphate synthase, putative/0.488
4kqsRISFarnesyl pyrophosphate synthase2.5.1.100.484
1yq7RISFarnesyl pyrophosphate synthase2.5.1.100.483
1zw5ZOLFarnesyl pyrophosphate synthase2.5.1.100.481
3krfDSTGeranyl diphosphate synthase large subunit/0.469
2i191BYFarnesyl pyrophosphate synthase/0.468
2o1oRISPutative farnesyl pyrophosphate synthase/0.465
4dxj0M9Farnesyl pyrophosphate synthase/0.463
4ga34GAFarnesyl pyrophosphate synthase2.5.1.100.456
3ldwIPEFarnesyl pyrophosphate synthase, putative/0.455
5ero210Fusicoccadiene synthase2.5.1.290.454
4jvj1MVFarnesyl pyrophosphate synthase2.5.1.100.453
3ryeUNRFarnesyl pyrophosphate synthase2.5.1.100.447
3ez3ZOLFarnesyl pyrophosphate synthase, putative/0.446
1xdpATPPolyphosphate kinase/0.445
1yv5RISFarnesyl pyrophosphate synthase2.5.1.100.445
4l2xYL2Farnesyl pyrophosphate synthase2.5.1.100.444