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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3d28B34Genome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3d28B34Genome polyprotein2.7.7.481.000
3u4r08FGenome polyprotein2.7.7.480.567
3bsc2PDGenome polyprotein2.7.7.480.562
2giqNN2Genome polyprotein2.7.7.480.560
3tyvHI3Genome polyprotein2.7.7.480.560
3d5m4MSGenome polyprotein2.7.7.480.555
3g86T18Genome polyprotein2.7.7.480.543
3gynB42Genome polyprotein2.7.7.480.539
3br9DEYGenome polyprotein2.7.7.480.537
4mkb28VGenome polyprotein2.7.7.480.536
3h59H59Genome polyprotein2.7.7.480.515
3u4o08EGenome polyprotein2.7.7.480.507
3h2lYAKGenome polyprotein2.7.7.480.503
2gc8885Polyprotein/0.500
4mk928RGenome polyprotein2.7.7.480.498
3csoXNIGenome polyprotein2.7.7.480.497
3igvB80Genome polyprotein2.7.7.480.496
3uph0C1Genome polyprotein2.7.7.480.493
3hkwIX6Genome polyprotein2.7.7.480.490
4mka2AYGenome polyprotein2.7.7.480.486
3ska053Genome polyprotein2.7.7.480.485
3gnvXNZGenome polyprotein2.7.7.480.471
3hkyIX6Genome polyprotein2.7.7.480.470
3ske054Genome polyprotein2.7.7.480.468
4eaw0NQGenome polyprotein2.7.7.480.458
2yoj8Y6Genome polyprotein2.7.7.480.456