sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 3c6p | 2S3 | Protein TRANSPORT INHIBITOR RESPONSE 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 3c6p | 2S3 | Protein TRANSPORT INHIBITOR RESPONSE 1 | / | 1.000 | |
| 3c6n | 2S8 | Protein TRANSPORT INHIBITOR RESPONSE 1 | / | 0.583 | |
| 2p1p | IAC | Protein TRANSPORT INHIBITOR RESPONSE 1 | / | 0.552 | |
| 3c6o | 2S2 | Protein TRANSPORT INHIBITOR RESPONSE 1 | / | 0.528 | |
| 3c4v | LIP | D-inositol 3-phosphate glycosyltransferase | 2.4.1.250 | 0.484 | |
| 4lv5 | ADP | Rhoptry protein 5B | / | 0.475 | |
| 4loi | 1YC | Stimulator of interferon genes protein | / | 0.471 | |
| 4c13 | UML | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L-lysine ligase | / | 0.470 | |
| 1uae | UD1 | UDP-N-acetylglucosamine 1-carboxyvinyltransferase | / | 0.464 | |
| 3gf4 | UPG | UDP-galactopyranose mutase | 5.4.99.9 | 0.453 | |
| 3fr5 | I4A | Fatty acid-binding protein, adipocyte | / | 0.451 | |
| 4h9t | HL4 | Phosphotriesterase | / | 0.451 | |
| 3qw4 | U5P | Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative | / | 0.449 | |
| 1qrt | ATP | Glutamine--tRNA ligase | 6.1.1.18 | 0.447 | |
| 4f5d | C2E | Stimulator of interferon genes protein | / | 0.447 | |
| 5cfl | C2E | Stimulator of interferon genes protein | / | 0.447 | |
| 1nj6 | A5A | Proline--tRNA ligase | / | 0.445 | |
| 3inr | GDU | UDP-galactopyranose mutase | 5.4.99.9 | 0.444 | |
| 1kqb | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.443 | |
| 3af1 | GDP | Pantothenate kinase | 2.7.1.33 | 0.442 | |
| 1icu | FMN | Oxygen-insensitive NAD(P)H nitroreductase | / | 0.441 | |
| 1coz | CTP | Glycerol-3-phosphate cytidylyltransferase | 2.7.7.39 | 0.440 | |
| 2a3c | PNX | Endochitinase B1 | 3.2.1.14 | 0.440 | |
| 2y1t | DUD | SPBc2 prophage-derived deoxyuridine 5'-triphosphate nucleotidohydrolase YosS | 3.6.1.23 | 0.440 | |
| 3ukf | GDU | UDP-galactopyranose mutase | / | 0.440 |