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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3c1oNAPEugenol synthase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity
Align
3c1oNAPEugenol synthase/1.000
2qw8NAPEugenol synthase 11.1.1.3180.576
2qx7NAPEugenol synthase 11.1.1.3180.540
2r6jNDPEugenol synthase 11.1.1.3180.540
3c3xNAPEugenol synthase 11.1.1.3180.495
2getCOKPantothenate kinase2.7.1.330.470
2gesCOKPantothenate kinase2.7.1.330.455
2uxoTACHTH-type transcriptional regulator TtgR/0.449
3dyqPCGHigh affinity cGMP-specific 3',5'-cyclic phosphodiesterase 9A/0.449
3zkpERBErythromycin C-12 hydroxylase1.14.13.1540.445
4b12C23Glycylpeptide N-tetradecanoyltransferase/0.443
4dbw511Aldo-keto reductase family 1 member C3/0.443