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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bsc2PDGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bsc2PDGenome polyprotein2.7.7.481.000
3g86T18Genome polyprotein2.7.7.480.589
2giqNN2Genome polyprotein2.7.7.480.586
3igvB80Genome polyprotein2.7.7.480.584
3br9DEYGenome polyprotein2.7.7.480.581
3u4r08FGenome polyprotein2.7.7.480.579
4mk928RGenome polyprotein2.7.7.480.556
4mka2AYGenome polyprotein2.7.7.480.548
3tyvHI3Genome polyprotein2.7.7.480.546
4mkb28VGenome polyprotein2.7.7.480.539
3hkwIX6Genome polyprotein2.7.7.480.533
3d28B34Genome polyprotein2.7.7.480.529
3d5m4MSGenome polyprotein2.7.7.480.518
3hkyIX6Genome polyprotein2.7.7.480.503
3gynB42Genome polyprotein2.7.7.480.500
3h59H59Genome polyprotein2.7.7.480.494
3u4o08EGenome polyprotein2.7.7.480.492
3h2lYAKGenome polyprotein2.7.7.480.476
3uph0C1Genome polyprotein2.7.7.480.473
3csoXNIGenome polyprotein2.7.7.480.455
3ska053Genome polyprotein2.7.7.480.440