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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3br9DEYGenome polyprotein2.7.7.48

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3br9DEYGenome polyprotein2.7.7.481.000
3gynB42Genome polyprotein2.7.7.480.665
3igvB80Genome polyprotein2.7.7.480.636
3bsc2PDGenome polyprotein2.7.7.480.609
4mkb28VGenome polyprotein2.7.7.480.582
4mka2AYGenome polyprotein2.7.7.480.581
3u4r08FGenome polyprotein2.7.7.480.576
4mk928RGenome polyprotein2.7.7.480.570
2giqNN2Genome polyprotein2.7.7.480.561
3g86T18Genome polyprotein2.7.7.480.558
3d28B34Genome polyprotein2.7.7.480.554
3tyvHI3Genome polyprotein2.7.7.480.548
3hkwIX6Genome polyprotein2.7.7.480.536
3d5m4MSGenome polyprotein2.7.7.480.524
3h59H59Genome polyprotein2.7.7.480.524
3hkyIX6Genome polyprotein2.7.7.480.506
3csoXNIGenome polyprotein2.7.7.480.490
3h2lYAKGenome polyprotein2.7.7.480.485
3ska053Genome polyprotein2.7.7.480.485
3uph0C1Genome polyprotein2.7.7.480.485
3u4o08EGenome polyprotein2.7.7.480.478
3e51N35Genome polyprotein2.7.7.480.476
3ske054Genome polyprotein2.7.7.480.466
4eaw0NQGenome polyprotein2.7.7.480.460
2yoj8Y6Genome polyprotein2.7.7.480.442