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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bgrT27Gag-Pol polyprotein2.7.7.49

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bgrT27Gag-Pol polyprotein2.7.7.491.000
4i2q1BTGag-Pol polyprotein2.7.7.490.557
2zd1T27Gag-Pol polyprotein2.7.7.490.554
4kfbT27Gag-Pol polyprotein2.7.7.490.533
4ifvT27Gag-Pol polyprotein2.7.7.490.532
3qlhT27Gag-Pol polyprotein2.7.7.490.529
4i2pG73Gag-Pol polyprotein2.7.7.490.495
4id5T27Gag-Pol polyprotein2.7.7.490.494
3is9AC7Gag-Pol polyprotein2.7.7.490.493
2ze2T27Gag-Pol polyprotein2.7.7.490.489
4rw6494Gag-Pol polyprotein2.7.7.490.486
1c1bGCAGag-Pol polyprotein2.7.7.490.477
3c6uM22Gag-Pol polyprotein2.7.7.490.457
3dmjGWEPol protein/0.445
5hes032Mitogen-activated protein kinase kinase kinase 202.7.11.250.440