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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3bbrBHYGlutamate receptor 2

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3bbrBHYGlutamate receptor 2/1.000
2xx91NFGlutamate receptor 2/0.607
3kgcLY7Glutamate receptor 2/0.600
2xhd7T9Glutamate receptor 2/0.563
3il1B5DGlutamate receptor 2/0.493
3ik6HCZGlutamate receptor 2/0.481
2cf6NAPCinnamyl alcohol dehydrogenase 51.1.1.1950.478
3h6vNS6Glutamate receptor 2/0.473
3te5NAI5'-AMP-activated protein kinase subunit gamma/0.455
3rnnRNNGlutamate receptor 2/0.451
3gqvNAPEnoyl reductase LovC10.447
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.445
1e3eNAIAlcohol dehydrogenase 41.1.1.10.442
4n9iPCGCatabolite expression activator/0.441
5dp2NAPCurF/0.441
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.440