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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3b3fSAHHistone-arginine methyltransferase CARM1

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3b3fSAHHistone-arginine methyltransferase CARM1/1.000
5dxjSFGHistone-arginine methyltransferase CARM1/0.486
5dx1SFGHistone-arginine methyltransferase CARM1/0.467
2y1xSAHHistone-arginine methyltransferase CARM1/0.464
5dx8SFGHistone-arginine methyltransferase CARM1/0.461
5dxaSFGHistone-arginine methyltransferase CARM1/0.461
5dwqSFGHistone-arginine methyltransferase CARM1/0.459
2y1wSFGHistone-arginine methyltransferase CARM1/0.454
1x1aSAMC-20 methyltransferase/0.445