2.400 Å
X-ray
2010-12-10
Name: | Histone-arginine methyltransferase CARM1 |
---|---|
ID: | CARM1_HUMAN |
AC: | Q86X55 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
B | 100 % |
B-Factor: | 24.753 |
---|---|
Number of residues: | 33 |
Including | |
Standard Amino Acids: | 29 |
Non Standard Amino Acids: | 2 |
Water Molecules: | 2 |
Cofactors: | |
Metals: | CL |
Ligandability | Volume (Å3) |
---|---|
0.717 | 729.000 |
% Hydrophobic | % Polar |
---|---|
43.52 | 56.48 |
According to VolSite |
HET Code: | 845 |
---|---|
Formula: | C24H23F3N7O2 |
Molecular weight: | 498.480 g/mol |
DrugBank ID: | - |
Buried Surface Area: | 62.47 % |
Polar Surface area: | 121.42 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 6 |
H-Bond Donors: | 5 |
Rings: | 5 |
Aromatic rings: | 3 |
Anionic atoms: | 0 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 6 |
X | Y | Z |
---|---|---|
29.5543 | -19.2566 | -22.5447 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C23 | CZ | TYR- 154 | 4.36 | 0 | Hydrophobic |
C7 | CB | ASN- 162 | 4.21 | 0 | Hydrophobic |
F17 | CB | ASN- 162 | 3.46 | 0 | Hydrophobic |
C7 | CG | MET- 163 | 4.3 | 0 | Hydrophobic |
C9 | SD | MET- 163 | 3.79 | 0 | Hydrophobic |
N22 | OE1 | GLU- 258 | 2.85 | 0 | Ionic (Ligand Cationic) |
N22 | OE2 | GLU- 258 | 2.76 | 0 | Ionic (Ligand Cationic) |
N22 | O | GLU- 258 | 2.55 | 138.9 | H-Bond (Ligand Donor) |
N22 | OE2 | GLU- 258 | 2.76 | 139.25 | H-Bond (Ligand Donor) |
N22 | O | MET- 260 | 3.15 | 140.46 | H-Bond (Ligand Donor) |
N14 | OE2 | GLU- 267 | 2.69 | 140.15 | H-Bond (Ligand Donor) |
C23 | SD | MET- 269 | 4.42 | 0 | Hydrophobic |
O21 | NE2 | HIS- 415 | 2.79 | 163.63 | H-Bond (Protein Donor) |
F18 | CB | HIS- 415 | 3.84 | 0 | Hydrophobic |
F18 | CE1 | TYR- 417 | 3.71 | 0 | Hydrophobic |
C29 | CZ | PHE- 475 | 3.49 | 0 | Hydrophobic |
F16 | CE1 | TYR- 477 | 4.49 | 0 | Hydrophobic |
F18 | CZ | TYR- 477 | 4.28 | 0 | Hydrophobic |