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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
3a8wATPProtein kinase C iota type2.7.11.13

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
3a8wATPProtein kinase C iota type2.7.11.131.000
4ekl0RFRAC-alpha serine/threonine-protein kinase2.7.11.10.486
4yhjAN2G protein-coupled receptor kinase 42.7.11.160.484
3ncz3NCRho-associated protein kinase 12.7.11.10.469
4l9i8PRRhodopsin kinase/0.462
4fv6E57Mitogen-activated protein kinase 12.7.11.240.453
3c4xATPRhodopsin kinase/0.451
3i60E86Mitogen-activated protein kinase 12.7.11.240.442