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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2zruFMNIsopentenyl-diphosphate delta-isomerase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2zruFMNIsopentenyl-diphosphate delta-isomerase/1.000
3vkjFNRIsopentenyl-diphosphate delta-isomerase/0.575
3b04OOPIsopentenyl-diphosphate delta-isomerase/0.567
2zrzFNRIsopentenyl-diphosphate delta-isomerase/0.543
2zryFNRIsopentenyl-diphosphate delta-isomerase/0.527
2zrvFNRIsopentenyl-diphosphate delta-isomerase/0.520
3b05FNRIsopentenyl-diphosphate delta-isomerase/0.513
3b03VNRIsopentenyl-diphosphate delta-isomerase/0.510
2zrxFMNIsopentenyl-diphosphate delta-isomerase/0.498
3dh7FMNIsopentenyl-diphosphate delta-isomerase/0.489
2xlsFADPutative flavin-containing monooxygenase/0.454
3p84FMNPentaerythritol tetranitrate reductase/0.449
2gjlFMNNitronate monooxygenase1.13.12.160.446
2xlpFADPutative flavin-containing monooxygenase/0.446
4uwmFMN3,6-diketocamphane 1,6 monooxygenase1.14.130.444
3g70A5TRenin3.4.23.150.443
1xddAAYIntegrin alpha-L/0.442
2ou2ACOHistone acetyltransferase KAT5/0.442
2po7CHDFerrochelatase, mitochondrial4.99.1.10.441
3ziaADPATP synthase subunit beta, mitochondrial3.6.3.140.441
2hydADPPutative multidrug export ATP-binding/permease protein SAV18663.6.30.440
2xpuTDCTetracycline repressor protein class D/0.440
4e2yJHZMethyltransferase/0.440