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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2z1qFADAcyl-CoA dehydrogenase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2z1qFADAcyl-CoA dehydrogenase/1.000
3owaFADAcyl-CoA dehydrogenase/0.595
3nf4FADAcyl-CoA dehydrogenase domain-containing protein/0.546
1egdFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.530
5jscFADPutative acyl-CoA dehydrogenase/0.520
3r7kFDAProbable acyl CoA dehydrogenase/0.519
1udyFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.515
1rx0FADIsobutyryl-CoA dehydrogenase, mitochondrial1.3.990.514
3pfdFDAAcyl-CoA dehydrogenase FadE25/0.507
1egeFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.504
4x28FDAAcyl-CoA dehydrogenase FadE26/0.500
4x28FDAAcyl-CoA dehydrogenase FadE27/0.500
1t9gFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.483
2a1tFADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial1.3.8.70.481
2ebaFADPutative glutaryl-CoA dehydrogenase/0.481
3mpjFADGlutaryl-CoA dehydrogenase1.3.99.320.473
4iv6FDAIsovaleryl-CoA dehydrogenase/0.471
4irnFADAnaB/0.468
3u33FADPutative acyl-CoA dehydrogenase AidB1.3.990.462
3p4tFAOPutative acyl-CoA dehydrogenase/0.455
2fonFADAcyl-coenzyme A oxidase/0.454
1jqiFADShort-chain specific acyl-CoA dehydrogenase, mitochondrial/0.449