scPDB - Distribution of Binding site Similarity values of 2yoz entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2yoz	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2yoz	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	1.000
3zbz	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.584
3zbs	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.577
4wdg	A2P	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.569
4wda	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.559
4wdf	A2P	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.555
3zbr	NAP	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.549
2yq9	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.537
4wdb	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.531
2ydd	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.509
2yph	QQY	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.494
4wfr	2AM	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.489
2dvl	FAD	Acyl-CoA dehydrogenase	/	0.478
2yp0	OVE	2',3'-cyclic-nucleotide 3'-phosphodiesterase	3.1.4.37	0.457
1siq	FAD	Glutaryl-CoA dehydrogenase, mitochondrial	1.3.8.6	0.452
1rfu	ADP	Pyridoxal kinase	2.7.1.35	0.451
1cf3	FAD	Glucose oxidase	1.1.3.4	0.446
2d29	FAD	Acyl-CoA dehydrogenase	/	0.446
4kzo	NAP	Isocitrate dehydrogenase [NADP] cytoplasmic	1.1.1.42	0.443
2jb4	A14	Isopenicillin N synthase	1.21.3.1	0.440