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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2ym2FADPhenylacetone monooxygenase1.14.13.92

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2ym2FADPhenylacetone monooxygenase1.14.13.921.000
4d03FADPhenylacetone monooxygenase1.14.13.920.618
2ylxFADPhenylacetone monooxygenase1.14.13.920.610
2ylrFADPhenylacetone monooxygenase1.14.13.920.607
2yltFADPhenylacetone monooxygenase1.14.13.920.593
4d04FADPhenylacetone monooxygenase1.14.13.920.585
2ylwFADPhenylacetone monooxygenase1.14.13.920.558
2ylsFADPhenylacetone monooxygenase1.14.13.920.542
2ylzFADPhenylacetone monooxygenase1.14.13.920.535
1w4xFADPhenylacetone monooxygenase1.14.13.920.529
3up4FAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.487
3uozFAD2-oxo-Delta(3)-4,5,5-trimethylcyclopentenylacetyl-CoA monooxygenase1.14.13.1600.472
1xddAAYIntegrin alpha-L/0.454
4z61ILE_THR_GLN_TYS_TYSPhytosulfokine receptor 12.7.11.10.451
2cmjNAPIsocitrate dehydrogenase [NADP] cytoplasmic1.1.1.420.450
2vbdV10Isopenicillin N synthase1.21.3.10.449
3djjFADGlutathione reductase, mitochondrial1.8.1.70.449
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.441
3kybFADUDP-galactopyranose mutase5.4.99.90.440