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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2yg7FADPutrescine oxidase

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2yg7FADPutrescine oxidase/1.000
3rhaFDAPutrescine oxidase/0.574
4i58FADCyclohexylamine Oxidase/0.545
3cn8FADPolyamine oxidase FMS1/0.540
3zdnFADMonoamine oxidase N1.4.3.40.540
2yg4FADPutrescine oxidase/0.527
3cntFADPolyamine oxidase FMS1/0.518
1xpqFADPolyamine oxidase FMS1/0.501
5l3dFADLysine-specific histone demethylase 1A10.498
3k7tFAD6-hydroxy-L-nicotine oxidase/0.496
4echFADPolyamine oxidase FMS1/0.491
3cndFADPolyamine oxidase FMS1/0.488
2iw5FADLysine-specific histone demethylase 1A10.484
4fwjFADLysine-specific histone demethylase 1B10.478
4guuFA9Lysine-specific histone demethylase 1B10.473
2uxxFAJLysine-specific histone demethylase 1A10.470
2ba9FADPutative aminooxidase/0.469
2vvlFADMonoamine oxidase N1.4.3.40.457
1f8rFADL-amino-acid oxidase1.4.3.20.446
2yg5FADPutrescine oxidase/0.446
3kpfFADPolyamine oxidase1.5.3.140.446
2babFADPutative aminooxidase/0.445