Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2y66N04UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.9

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2y66N04UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.91.000
2vteIK4UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.601
2vtdLKMUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.579
2jfhLK1UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.567
2y1oT26UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.536
3uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.497
2y67N21UDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.445
2uagUMAUDP-N-acetylmuramoylalanine--D-glutamate ligase6.3.2.90.441