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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2xulATPNitrogen regulatory protein P-II

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2xulATPNitrogen regulatory protein P-II/1.000
3mhyATPNitrogen regulatory protein P-II 1/0.533
3ncrADPNitrogen regulatory protein P-II (GlnB-2)/0.502
3ncqATPNitrogen regulatory protein P-II (GlnB-2)/0.493
4oznATPAmmonium transporter/0.475
3ta0ATPNitrogen regulatory protein P-II (GlnB-3)/0.470
1v3sATPSignaling protein/0.469
1v9oADPSignaling protein/0.469
2xzwATPNitrogen regulatory protein P-II/0.460
3ta2ATPNitrogen regulatory protein P-II (GlnB-3)/0.443