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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2wb2FADRE11660p

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2wb2FADRE11660p/1.000
2wq7FADRE11660p/0.646
2wq6FADRE11660p/0.617
3cvuFADRE11660p/0.550
2j4dFADCryptochrome DASH, chloroplastic/mitochondrial/0.533
1np7FADCryptochrome DASH/0.530
3cvyFADRE11660p/0.530
4djaFAD(6-4) photolyase/0.530
2vtbFADCryptochrome DASH, chloroplastic/mitochondrial/0.526
2ijgFADCryptochrome DASH, chloroplastic/mitochondrial/0.509
4i6gFADCryptochrome-2/0.505
4jzyFADCryptochrome-1/0.500
1owlFADDeoxyribodipyrimidine photo-lyase4.1.99.30.498
1tezFADDeoxyribodipyrimidine photo-lyase4.1.99.30.487
3zxsFADDeoxyribodipyrimidine photolyase-related protein/0.483
1ownFADDeoxyribodipyrimidine photo-lyase4.1.99.30.477
1owmFADDeoxyribodipyrimidine photo-lyase4.1.99.30.473
1dnpFADDeoxyribodipyrimidine photo-lyase4.1.99.30.469
4gu5FADCryptochrome-1/0.463
1qnfFADDeoxyribodipyrimidine photo-lyase4.1.99.30.453
2j07FADDeoxyribodipyrimidine photo-lyase4.1.99.30.450
2j09FADDeoxyribodipyrimidine photo-lyase4.1.99.30.445
2j08FADDeoxyribodipyrimidine photo-lyase4.1.99.30.441
1u3dFADCryptochrome-1/0.440