scPDB - Distribution of Binding site Similarity values of 2vwp entry / Site 1

Distribution of Binding site similarity measured by Shaper

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Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :

PDB ID	HET	Uniprot Name	EC Number
2vwp	NDP	Glucose 1-dehydrogenase

Complex with similar binding sites

PDB ID	HET	Uniprot Name	EC Number	Binding Site Similarity
2vwp	NDP	Glucose 1-dehydrogenase	/	1.000
2vwq	NAP	Glucose 1-dehydrogenase	/	0.727
2b5v	NAP	Glucose 1-dehydrogenase	/	0.639
1pl8	NAD	Sorbitol dehydrogenase	1.1.1.14	0.498
2vwh	NAP	Glucose 1-dehydrogenase	/	0.484
4ez5	0RS	Cyclin-dependent kinase 6	2.7.11.22	0.466
4ejm	NAP	Putative zinc-binding dehydrogenase	/	0.465
3r1s	X73	Cyclin-dependent kinase 2	2.7.11.22	0.462
3r7u	X96	Cyclin-dependent kinase 2	2.7.11.22	0.462
3t11	3T1	Gag-Pol polyprotein	3.4.23.16	0.461
4kzo	NAP	Isocitrate dehydrogenase [NADP] cytoplasmic	1.1.1.42	0.461
2bts	U32	Cyclin-dependent kinase 2	2.7.11.22	0.460
4cdm	FAD	Deoxyribodipyrimidine photolyase	/	0.458
4kbk	1QG	Casein kinase I isoform delta	2.7.11.1	0.457
4y95	746	Tyrosine-protein kinase	/	0.457
4h50	NAP	Biphenyl dioxygenase ferredoxin reductase subunit	/	0.456
4hvb	19P	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.456
2vr1	ATF	Biotin carboxylase	6.3.4.14	0.455
3zew	STU	Ephrin type-B receptor 4	2.7.10.1	0.454
3pb3	SAH	16S rRNA (adenine(1408)-N(1))-methyltransferase	2.1.1.180	0.453
1c6z	ROC	Protease	/	0.452
2gu8	796	cAMP-dependent protein kinase catalytic subunit alpha	2.7.11.11	0.452
2iw8	4SP	Cyclin-dependent kinase 2	2.7.11.22	0.452
1d4a	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.450
1k6p	XN3	Gag-Pol polyprotein	3.4.23.16	0.450
3m6i	NAD	L-arabinitol 4-dehydrogenase	1.1.1.12	0.450
3mdv	CL6	Cholesterol 24-hydroxylase	/	0.450
3ssn	MVI	Mycinamicin VI 2''-O-methyltransferase	/	0.449
1c1d	NAI	Phenylalanine dehydrogenase	/	0.448
3umv	FAD	Deoxyribodipyrimidine photo-lyase	4.1.99.3	0.448
1uu9	BI3	3-phosphoinositide-dependent protein kinase 1	2.7.11.1	0.447
3inm	NDP	Isocitrate dehydrogenase [NADP] cytoplasmic	1.1.1.42	0.447
3ml8	ML8	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit gamma isoform	2.7.1.153	0.447
3t5i	SER_SER_CMT_FAR	Retinal rod rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit delta	/	0.447
4iwq	1FV	Serine/threonine-protein kinase TBK1	2.7.11.1	0.447
4yr9	NAD	L-threonine 3-dehydrogenase, mitochondrial	1.1.1.103	0.446
1h66	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.445
3qrt	X14	Cyclin-dependent kinase 2	2.7.11.22	0.445
1k6t	XN1	Gag-Pol polyprotein	3.4.23.16	0.444
2cpp	CAM	Camphor 5-monooxygenase	1.14.15.1	0.444
2pwc	G3G	Gag-Pol polyprotein	3.4.23.16	0.444
3cd3	STU	Tyrosine-protein kinase Fes/Fps	2.7.10.2	0.444
1u3c	FAD	Cryptochrome-1	/	0.443
4fkp	LS5	Cyclin-dependent kinase 2	2.7.11.22	0.443
3jy0	LYG	Serine/threonine-protein kinase pim-1	2.7.11.1	0.442
3u9e	COA	Lmo1369 protein	/	0.442
4ic7	ANP	Mitogen-activated protein kinase 7	2.7.11.24	0.442
1rdt	570	Peroxisome proliferator-activated receptor gamma	/	0.441
4n9i	PCG	Catabolite expression activator	/	0.441
1qbg	FAD	NAD(P)H dehydrogenase [quinone] 1	1.6.5.2	0.440
4eke	D1I	Glycogen phosphorylase, muscle form	2.4.1.1	0.440
4j95	ACP	Fibroblast growth factor receptor 2	/	0.440