sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Sites are compared using Shaper.
For more information, please see the following publication:
Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2tps | TPS | Thiamine-phosphate synthase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Site Similarity |
Align |
|---|---|---|---|---|---|
| 2tps | TPS | Thiamine-phosphate synthase | / | 1.000 | |
| 1g4t | FTP | Thiamine-phosphate synthase | / | 0.610 | |
| 1g4s | TPS | Thiamine-phosphate synthase | / | 0.598 | |
| 1g67 | TZP | Thiamine-phosphate synthase | / | 0.565 | |
| 3nl6 | TPS | Uncharacterized protein | / | 0.554 | |
| 1g69 | TZP | Thiamine-phosphate synthase | / | 0.526 | |
| 1g6c | TZP | Thiamine-phosphate synthase | / | 0.474 | |
| 3mpj | FAD | Glutaryl-CoA dehydrogenase | 1.3.99.32 | 0.468 | |
| 4nu5 | NAD | Phosphonate dehydrogenase | 1.20.1.1 | 0.462 | |
| 3ohh | 3HH | Beta-secretase 1 | 3.4.23.46 | 0.449 | |
| 5a4k | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.448 | |
| 3o15 | 3NM | Thiamine-phosphate synthase | / | 0.447 | |
| 1d4a | FAD | NAD(P)H dehydrogenase [quinone] 1 | 1.6.5.2 | 0.446 | |
| 3b70 | NAP | Enoyl reductase LovC | 1 | 0.443 | |
| 1yb5 | NAP | Quinone oxidoreductase | 1.6.5.5 | 0.441 | |
| 4kqw | NAP | Ketol-acid reductoisomerase (NADP(+)) | / | 0.441 | |
| 3lpi | Z74 | Beta-secretase 1 | 3.4.23.46 | 0.440 | |
| 3w0a | DS5 | Vitamin D3 receptor | / | 0.440 |