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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2qmyFADRibosyldihydronicotinamide dehydrogenase [quinone]/1.000
4zvlFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.670
4zvnFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.660
4qoeFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.650
3g5mFADRibosyldihydronicotinamide dehydrogenase [quinone]/0.643
1qr2FADRibosyldihydronicotinamide dehydrogenase [quinone]/0.635
4qofFMNRibosyldihydronicotinamide dehydrogenase [quinone]/0.618
1qbgFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.494
1h69FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.491
1kboFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.491
5eaiFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.485
1h66FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.484
1kbqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.484
1gg5FADNAD(P)H dehydrogenase [quinone] 11.6.5.20.481
1dxqFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.466
1dxoFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.465
5a4kFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.453
4gi5FADPutative NAD(P)H dehydrogenase (Quinone)/0.447
1d4aFADNAD(P)H dehydrogenase [quinone] 11.6.5.20.443