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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2q8sL92Peroxisome proliferator-activated receptor gamma

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2q8sL92Peroxisome proliferator-activated receptor gamma/1.000
2pobGW4Peroxisome proliferator-activated receptor gamma/0.641
2f4bEHAPeroxisome proliferator-activated receptor gamma/0.635
2hwrDRDPeroxisome proliferator-activated receptor gamma/0.631
2ath3EAPeroxisome proliferator-activated receptor gamma/0.625
3vjhJ35Peroxisome proliferator-activated receptor gamma/0.620
1fm9570Peroxisome proliferator-activated receptor gamma/0.615
2znoS44Peroxisome proliferator-activated receptor gamma/0.609
3vsoEK1Peroxisome proliferator-activated receptor gamma/0.605
2gtk208Peroxisome proliferator-activated receptor gamma/0.600
1i7iAZ2Peroxisome proliferator-activated receptor gamma/0.593
1rdt570Peroxisome proliferator-activated receptor gamma/0.588
1zgyBRLPeroxisome proliferator-activated receptor gamma/0.584
4hee14RPeroxisome proliferator-activated receptor gamma/0.584
1nyxDRFPeroxisome proliferator-activated receptor gamma/0.576
3vspEK8Peroxisome proliferator-activated receptor gamma/0.570
4xldBRLPeroxisome proliferator-activated receptor gamma/0.565
1k74544Peroxisome proliferator-activated receptor gamma/0.557
1fm6BRLPeroxisome proliferator-activated receptor gamma/0.551
4emaBRLPeroxisome proliferator-activated receptor gamma/0.550
2p4yC03Peroxisome proliferator-activated receptor gamma/0.540
1knuYPAPeroxisome proliferator-activated receptor gamma/0.538
2znnS44Peroxisome proliferator-activated receptor alpha/0.535
2npaMMBPeroxisome proliferator-activated receptor alpha/0.534
3sp6IL2Peroxisome proliferator-activated receptor alpha/0.533
2q5p241Peroxisome proliferator-activated receptor gamma/0.530
1i7gAZ2Peroxisome proliferator-activated receptor alpha/0.529
3gbk2PQPeroxisome proliferator-activated receptor gamma/0.525
1k7l544Peroxisome proliferator-activated receptor alpha/0.518
3v9y24LPeroxisome proliferator-activated receptor gamma/0.518
4f9mFCMPeroxisome proliferator-activated receptor gamma/0.507
4o8fBRLPeroxisome proliferator-activated receptor gamma/0.506
2q61SF1Peroxisome proliferator-activated receptor gamma/0.505
3vn2TLSPeroxisome proliferator-activated receptor gamma/0.505
1kkq471Peroxisome proliferator-activated receptor alpha/0.499
2hfpNSIPeroxisome proliferator-activated receptor gamma/0.488
3sp9IL2Peroxisome proliferator-activated receptor delta/0.485
2q59240Peroxisome proliferator-activated receptor gamma/0.475
2znpK55Peroxisome proliferator-activated receptor delta/0.472
4a4wYFBPeroxisome proliferator-activated receptor gamma/0.471
3kduNKSPeroxisome proliferator-activated receptor alpha/0.470
3v9v21LPeroxisome proliferator-activated receptor gamma/0.469
4e4qRRHPeroxisome proliferator-activated receptor gamma/0.467
2znq401Peroxisome proliferator-activated receptor delta/0.463
4a4vYFDPeroxisome proliferator-activated receptor gamma/0.463
2rewREWPeroxisome proliferator-activated receptor alpha/0.458
4xumIMNPeroxisome proliferator-activated receptor gamma/0.456
2om9AJAPeroxisome proliferator-activated receptor gamma/0.454
4xuhSFIPeroxisome proliferator-activated receptor gamma/0.443