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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Binding site similarity measured by Shaper
You can zoom onto the graph by using the mouse to make a selection

Binding Sites are compared using Shaper.
For more information, please see the following publication: Desaphy J. et al. Comparison and Druggability Prediction of protein-Ligand Binding sites from pharmacophore-annotated cavity shapes J. Chem. Inf. Model., 2012, 52(8), pp2287-2299
Binding Sites are considered as similar when the similarity value is greater than 0.44

Reference Protein Data Bank Entry :
PDB IDHETUniprot NameEC Number
2q4bNAPUncharacterized protein At5g02240

Complex with similar binding sites

PDB ID HET Uniprot Name EC Number Binding Site
Similarity		 Align
2q4bNAPUncharacterized protein At5g02240/1.000
1ybmNAPUncharacterized protein At5g02240/0.629
1xq6NAPUncharacterized protein At5g02240/0.610
1hdoNAPFlavin reductase (NADPH)/0.486
4c7kNAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.482
2rbeNDPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.477
1ipeNDPTropinone reductase 21.1.1.2360.454
3iahNAPPutative oxoacyl-(Acyl carrier protein) reductase/0.453
2gn8NAPUDP-N-acetylglucosamine 4,6-dehydratase (inverting)4.2.1.1150.449
4e5yNDPGDP-L-fucose synthase1.1.1.2710.449
3g49NAPCorticosteroid 11-beta-dehydrogenase isozyme 11.1.1.1460.447
4jbiNDPAlcohol dehydrogenase (Zinc)/0.444
3triNAPPyrroline-5-carboxylate reductase/0.443
5dcyNAPIridoid synthase1.3.1.990.443
4qecNAPElxO/0.442
5bsgNAPPyrroline-5-carboxylate reductase/0.440